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Project info
Samples: dcDNA Seq
pychopper: no
mapping version: v6
LoRTIA: yes (stranded only output)
Normalization: Viral read count
Count multiplier for DEG analysis: 10000x
This is to counter zeros
TES dynamics
Those reads were counted only, where the 3-prime adapters
were “correct” (according to LoRTIA)
Statistics of counts
Difference from mean

Varcoeff

hclust


Assigning genes to clusters
ORF kinetics, according to literature-based kinetic
classes
Barplot of mean and SD


Mean and SD with loess function

Each replicate with loess

ORF kinetics, according to de-novo kinetic
classes
All ORFs - Mean and SD with linear connection
Clustered ORFs only - Mean and SD with linear connection

Compare literature and de novo kinetic classes
NA shows the number of genes where the clustering did not yield
an unambiguous result.


Combine Kinetic classes
De Novo - Significant


De Novo - All clusters

Literature clusters
